Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 DUSP8P3-201ENST00000399571 1760 ntBASIC20.35■□□□□ 0.85
COL28A1Q2UY09 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 MKRN4P-201ENST00000444706 1521 ntBASIC20.34■□□□□ 0.85
COL28A1Q2UY09 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 AC073912.3-201ENST00000624414 853 ntBASIC20.34■□□□□ 0.85
COL28A1Q2UY09 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 KRT87P-202ENST00000534226 1464 ntBASIC20.34■□□□□ 0.85
COL28A1Q2UY09 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.34■□□□□ 0.85
COL28A1Q2UY09 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL28A1Q2UY09 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL28A1Q2UY09 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.33■□□□□ 0.84
COL28A1Q2UY09 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL28A1Q2UY09 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
COL28A1Q2UY09 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.33■□□□□ 0.84
COL28A1Q2UY09 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL28A1Q2UY09 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL28A1Q2UY09 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 AC211429.1-201ENST00000415277 523 ntBASIC20.3■□□□□ 0.84
COL28A1Q2UY09 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms