Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PCDH1Q08174 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDH1Q08174 MIR638-201ENST00000385237 100 ntBASIC20.46■□□□□ 0.87
PCDH1Q08174 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDH1Q08174 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
PCDH1Q08174 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDH1Q08174 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDH1Q08174 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PCDH1Q08174 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 TPRG1LP1-201ENST00000598702 760 ntBASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDH1Q08174 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PCDH1Q08174 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDH1Q08174 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.44■□□□□ 0.86
PCDH1Q08174 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
PCDH1Q08174 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PCDH1Q08174 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDH1Q08174 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDH1Q08174 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDH1Q08174 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDH1Q08174 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDH1Q08174 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDH1Q08174 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
PCDH1Q08174 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDH1Q08174 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDH1Q08174 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDH1Q08174 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDH1Q08174 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
PCDH1Q08174 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDH1Q08174 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDH1Q08174 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PCDH1Q08174 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDH1Q08174 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDH1Q08174 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDH1Q08174 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDH1Q08174 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDH1Q08174 AL024507.2-201ENST00000606070 2574 ntBASIC20.42■□□□□ 0.86
PCDH1Q08174 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDH1Q08174 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDH1Q08174 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.41■□□□□ 0.86
PCDH1Q08174 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 FEM1AP4-201ENST00000443167 1987 ntBASIC20.41■□□□□ 0.86
PCDH1Q08174 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PCDH1Q08174 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PCDH1Q08174 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PCDH1Q08174 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms