Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC29.73■■■□□ 2.35
MSH6P52701 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
MSH6P52701 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH6P52701 AL034346.1-201ENST00000568244 1277 ntBASIC29.73■■■□□ 2.35
MSH6P52701 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH6P52701 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
MSH6P52701 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
MSH6P52701 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
MSH6P52701 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
MSH6P52701 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC29.72■■■□□ 2.35
MSH6P52701 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
MSH6P52701 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC29.72■■■□□ 2.35
MSH6P52701 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC29.71■■■□□ 2.35
MSH6P52701 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC29.71■■■□□ 2.35
MSH6P52701 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC29.71■■■□□ 2.35
MSH6P52701 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
MSH6P52701 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC29.71■■■□□ 2.35
MSH6P52701 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC29.71■■■□□ 2.35
MSH6P52701 HLA-B-256ENST00000639848 1089 ntBASIC29.71■■■□□ 2.35
MSH6P52701 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
MSH6P52701 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.71■■■□□ 2.35
MSH6P52701 AP006587.3-201ENST00000525742 1516 ntBASIC29.71■■■□□ 2.35
MSH6P52701 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
MSH6P52701 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC29.7■■■□□ 2.35
MSH6P52701 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 BX088651.1-201ENST00000540551 451 ntBASIC29.7■■■□□ 2.35
MSH6P52701 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC29.7■■■□□ 2.35
MSH6P52701 SPIB-206ENST00000596074 847 ntTSL 2 BASIC29.7■■■□□ 2.35
MSH6P52701 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
MSH6P52701 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
MSH6P52701 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
MSH6P52701 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
MSH6P52701 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC29.7■■■□□ 2.34
MSH6P52701 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC29.7■■■□□ 2.34
MSH6P52701 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC29.7■■■□□ 2.34
MSH6P52701 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC29.7■■■□□ 2.34
MSH6P52701 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
MSH6P52701 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC29.69■■■□□ 2.34
MSH6P52701 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC29.69■■■□□ 2.34
MSH6P52701 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC29.69■■■□□ 2.34
MSH6P52701 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC29.69■■■□□ 2.34
MSH6P52701 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
MSH6P52701 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
MSH6P52701 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC29.69■■■□□ 2.34
MSH6P52701 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH6P52701 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.68■■■□□ 2.34
MSH6P52701 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
MSH6P52701 MDFI-202ENST00000373050 809 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 NME6-213ENST00000451657 871 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.68■■■□□ 2.34
MSH6P52701 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
MSH6P52701 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
MSH6P52701 POU5F1P4-201ENST00000413175 1085 ntBASIC29.67■■■□□ 2.34
MSH6P52701 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC29.67■■■□□ 2.34
MSH6P52701 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC29.67■■■□□ 2.34
MSH6P52701 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC29.67■■■□□ 2.34
MSH6P52701 AC243732.1-201ENST00000612648 864 ntBASIC29.67■■■□□ 2.34
MSH6P52701 KRT17P1-201ENST00000399211 1546 ntBASIC29.67■■■□□ 2.34
MSH6P52701 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC29.67■■■□□ 2.34
MSH6P52701 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC29.66■■■□□ 2.34
MSH6P52701 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC29.66■■■□□ 2.34
MSH6P52701 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 RN7SL471P-201ENST00000580476 299 ntBASIC29.66■■■□□ 2.34
MSH6P52701 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
MSH6P52701 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 KRT16P2-201ENST00000414673 1423 ntBASIC29.65■■■□□ 2.34
MSH6P52701 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
MSH6P52701 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC29.65■■■□□ 2.34
MSH6P52701 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
MSH6P52701 KRT17P3-201ENST00000420566 1262 ntBASIC29.64■■■□□ 2.34
MSH6P52701 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC29.64■■■□□ 2.34
MSH6P52701 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms