Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.83■■□□□ 1.09
NEK3P51956 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NEK3P51956 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
NEK3P51956 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.83■■□□□ 1.09
NEK3P51956 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NEK3P51956 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NEK3P51956 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
NEK3P51956 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
NEK3P51956 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NEK3P51956 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.83■■□□□ 1.08
NEK3P51956 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.82■■□□□ 1.08
NEK3P51956 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.82■■□□□ 1.08
NEK3P51956 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NEK3P51956 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
NEK3P51956 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NEK3P51956 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
NEK3P51956 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NEK3P51956 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NEK3P51956 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
NEK3P51956 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.81■■□□□ 1.08
NEK3P51956 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.81■■□□□ 1.08
NEK3P51956 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.81■■□□□ 1.08
NEK3P51956 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
NEK3P51956 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
NEK3P51956 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.81■■□□□ 1.08
NEK3P51956 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
NEK3P51956 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NEK3P51956 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
NEK3P51956 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NEK3P51956 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
NEK3P51956 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
NEK3P51956 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NEK3P51956 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NEK3P51956 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NEK3P51956 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.8■■□□□ 1.08
NEK3P51956 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.8■■□□□ 1.08
NEK3P51956 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
NEK3P51956 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
NEK3P51956 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.79■■□□□ 1.08
NEK3P51956 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
NEK3P51956 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
NEK3P51956 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NEK3P51956 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
NEK3P51956 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
NEK3P51956 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 NTF6G-201ENST00000591094 616 ntBASIC21.78■■□□□ 1.08
NEK3P51956 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.78■■□□□ 1.08
NEK3P51956 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.78■■□□□ 1.08
NEK3P51956 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NEK3P51956 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NEK3P51956 AC005229.4-201ENST00000610085 2198 ntBASIC21.77■■□□□ 1.08
NEK3P51956 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.77■■□□□ 1.08
NEK3P51956 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.77■■□□□ 1.08
NEK3P51956 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NEK3P51956 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NEK3P51956 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NEK3P51956 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NEK3P51956 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.77■■□□□ 1.08
NEK3P51956 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.77■■□□□ 1.08
NEK3P51956 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
NEK3P51956 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NEK3P51956 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NEK3P51956 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NEK3P51956 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.76■■□□□ 1.07
NEK3P51956 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NEK3P51956 AC079089.2-201ENST00000531211 1277 ntBASIC21.76■■□□□ 1.07
NEK3P51956 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
NEK3P51956 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
NEK3P51956 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.76■■□□□ 1.07
NEK3P51956 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
NEK3P51956 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.76■■□□□ 1.07
NEK3P51956 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NEK3P51956 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NEK3P51956 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NEK3P51956 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.75■■□□□ 1.07
NEK3P51956 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NEK3P51956 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms