Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 AC009102.2-201ENST00000606772 1639 ntBASIC17.32■□□□□ 0.36
NKX2-1P43699 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NKX2-1P43699 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.31■□□□□ 0.36
NKX2-1P43699 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 OR7E47P-201ENST00000546390 1422 ntBASIC17.31■□□□□ 0.36
NKX2-1P43699 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
NKX2-1P43699 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX2-1P43699 AL049796.1-201ENST00000565336 1766 ntBASIC17.31■□□□□ 0.36
NKX2-1P43699 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.31■□□□□ 0.36
NKX2-1P43699 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.31■□□□□ 0.36
NKX2-1P43699 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NKX2-1P43699 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
NKX2-1P43699 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC17.3■□□□□ 0.36
NKX2-1P43699 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC17.3■□□□□ 0.36
NKX2-1P43699 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.3■□□□□ 0.36
NKX2-1P43699 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NKX2-1P43699 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.3■□□□□ 0.36
NKX2-1P43699 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
NKX2-1P43699 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
NKX2-1P43699 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC17.29■□□□□ 0.36
NKX2-1P43699 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.29■□□□□ 0.36
NKX2-1P43699 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
NKX2-1P43699 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.29■□□□□ 0.36
NKX2-1P43699 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
NKX2-1P43699 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
NKX2-1P43699 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
NKX2-1P43699 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NKX2-1P43699 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.29■□□□□ 0.36
NKX2-1P43699 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
NKX2-1P43699 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC17.28■□□□□ 0.36
NKX2-1P43699 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX2-1P43699 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.28■□□□□ 0.36
NKX2-1P43699 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX2-1P43699 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.28■□□□□ 0.36
NKX2-1P43699 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NKX2-1P43699 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.28■□□□□ 0.36
NKX2-1P43699 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NKX2-1P43699 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.27■□□□□ 0.36
NKX2-1P43699 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
NKX2-1P43699 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NKX2-1P43699 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
NKX2-1P43699 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
NKX2-1P43699 AL499627.2-201ENST00000606283 725 ntBASIC17.27■□□□□ 0.36
NKX2-1P43699 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
NKX2-1P43699 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX2-1P43699 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NKX2-1P43699 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms