Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.42■□□□□ 0.22
CXCL1P09341 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CXCL1P09341 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CXCL1P09341 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 AC073314.1-201ENST00000568729 2216 ntBASIC16.42■□□□□ 0.22
CXCL1P09341 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CXCL1P09341 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CXCL1P09341 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CXCL1P09341 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CXCL1P09341 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL1P09341 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 DUX4L9-201ENST00000449051 1259 ntBASIC16.41■□□□□ 0.22
CXCL1P09341 PVT1-219ENST00000523427 938 ntTSL 3 BASIC16.41■□□□□ 0.22
CXCL1P09341 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 AC019171.1-201ENST00000601251 1056 ntBASIC16.41■□□□□ 0.22
CXCL1P09341 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC16.41■□□□□ 0.22
CXCL1P09341 GAK-223ENST00000628912 497 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL1P09341 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CXCL1P09341 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.41■□□□□ 0.22
CXCL1P09341 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.41■□□□□ 0.22
CXCL1P09341 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CXCL1P09341 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CXCL1P09341 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL1P09341 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CXCL1P09341 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL1P09341 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC16.4■□□□□ 0.22
CXCL1P09341 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.4■□□□□ 0.22
CXCL1P09341 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CXCL1P09341 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL1P09341 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CXCL1P09341 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.4■□□□□ 0.22
CXCL1P09341 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CXCL1P09341 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL1P09341 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC16.39■□□□□ 0.21
CXCL1P09341 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL1P09341 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC16.39■□□□□ 0.21
CXCL1P09341 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.39■□□□□ 0.21
CXCL1P09341 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CXCL1P09341 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CXCL1P09341 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 HYI-210ENST00000486909 905 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC16.38■□□□□ 0.21
CXCL1P09341 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CXCL1P09341 AC004408.2-201ENST00000623613 2777 ntBASIC16.38■□□□□ 0.21
CXCL1P09341 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CXCL1P09341 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CXCL1P09341 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CXCL1P09341 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.38■□□□□ 0.21
CXCL1P09341 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
CXCL1P09341 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms