Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DQB2P05538 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 Z98882.1-201ENST00000622160 2253 ntBASIC21.56■■□□□ 1.04
HLA-DQB2P05538 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DQB2P05538 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 CCDC92B-201ENST00000575506 885 ntBASIC21.55■■□□□ 1.04
HLA-DQB2P05538 TERF1P2-201ENST00000583350 1212 ntBASIC21.55■■□□□ 1.04
HLA-DQB2P05538 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.55■■□□□ 1.04
HLA-DQB2P05538 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 CLDN5-201ENST00000403084 2357 ntBASIC21.54■■□□□ 1.04
HLA-DQB2P05538 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 AC079140.4-201ENST00000507448 529 ntBASIC21.54■■□□□ 1.04
HLA-DQB2P05538 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DQB2P05538 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 AC026310.3-201ENST00000625186 2373 ntBASIC21.53■■□□□ 1.04
HLA-DQB2P05538 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
HLA-DQB2P05538 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.52■■□□□ 1.04
HLA-DQB2P05538 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HLA-DQB2P05538 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
HLA-DQB2P05538 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 KRT18P14-201ENST00000534205 1250 ntBASIC21.51■■□□□ 1.03
HLA-DQB2P05538 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.51■■□□□ 1.03
HLA-DQB2P05538 EEF1DP3-203ENST00000566025 782 ntBASIC21.5■■□□□ 1.03
HLA-DQB2P05538 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 KRT87P-202ENST00000534226 1464 ntBASIC21.5■■□□□ 1.03
HLA-DQB2P05538 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HLA-DQB2P05538 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms