Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 AC087239.1-201ENST00000622671 572 ntBASIC20.73■□□□□ 0.91
VPS4BO75351 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
VPS4BO75351 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VPS4BO75351 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4BO75351 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS4BO75351 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4BO75351 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4BO75351 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS4BO75351 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VPS4BO75351 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS4BO75351 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS4BO75351 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4BO75351 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4BO75351 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
VPS4BO75351 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 AC233992.3-201ENST00000607491 485 ntBASIC20.71■□□□□ 0.91
VPS4BO75351 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS4BO75351 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS4BO75351 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4BO75351 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
VPS4BO75351 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.7■□□□□ 0.91
VPS4BO75351 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS4BO75351 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
VPS4BO75351 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS4BO75351 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.7■□□□□ 0.9
VPS4BO75351 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
VPS4BO75351 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VPS4BO75351 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4BO75351 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS4BO75351 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS4BO75351 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS4BO75351 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 AC006455.2-201ENST00000429931 906 ntBASIC20.69■□□□□ 0.9
VPS4BO75351 KRT18P5-201ENST00000436075 1291 ntBASIC20.69■□□□□ 0.9
VPS4BO75351 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4BO75351 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4BO75351 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4BO75351 AC136469.2-201ENST00000623944 1028 ntBASIC20.69■□□□□ 0.9
VPS4BO75351 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4BO75351 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VPS4BO75351 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4BO75351 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VPS4BO75351 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4BO75351 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS4BO75351 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
VPS4BO75351 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4BO75351 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS4BO75351 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS4BO75351 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS4BO75351 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS4BO75351 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS4BO75351 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS4BO75351 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4BO75351 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4BO75351 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
VPS4BO75351 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VPS4BO75351 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 ID1-201ENST00000376105 1233 ntBASIC20.67■□□□□ 0.9
VPS4BO75351 BX842568.3-201ENST00000418104 571 ntBASIC20.67■□□□□ 0.9
VPS4BO75351 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 OR2I1P-207ENST00000453522 948 ntBASIC20.67■□□□□ 0.9
VPS4BO75351 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms