Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
PROM1O43490 AC104564.3-201ENST00000582367 638 ntBASIC20.13■□□□□ 0.81
PROM1O43490 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PROM1O43490 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PROM1O43490 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PROM1O43490 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.13■□□□□ 0.81
PROM1O43490 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
PROM1O43490 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.12■□□□□ 0.81
PROM1O43490 AC244015.2-201ENST00000616358 1861 ntBASIC20.12■□□□□ 0.81
PROM1O43490 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.12■□□□□ 0.81
PROM1O43490 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.12■□□□□ 0.81
PROM1O43490 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.12■□□□□ 0.81
PROM1O43490 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PROM1O43490 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.12■□□□□ 0.81
PROM1O43490 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PROM1O43490 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.12■□□□□ 0.81
PROM1O43490 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PROM1O43490 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PROM1O43490 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.11■□□□□ 0.81
PROM1O43490 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PROM1O43490 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.11■□□□□ 0.81
PROM1O43490 MIR5787-201ENST00000611784 55 ntBASIC20.11■□□□□ 0.81
PROM1O43490 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.11■□□□□ 0.81
PROM1O43490 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.11■□□□□ 0.81
PROM1O43490 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.11■□□□□ 0.81
PROM1O43490 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.11■□□□□ 0.81
PROM1O43490 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PROM1O43490 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PROM1O43490 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.11■□□□□ 0.81
PROM1O43490 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.11■□□□□ 0.81
PROM1O43490 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.1■□□□□ 0.81
PROM1O43490 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PROM1O43490 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PROM1O43490 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PROM1O43490 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PROM1O43490 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PROM1O43490 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.1■□□□□ 0.81
PROM1O43490 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.1■□□□□ 0.81
PROM1O43490 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PROM1O43490 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PROM1O43490 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.09■□□□□ 0.81
PROM1O43490 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.09■□□□□ 0.81
PROM1O43490 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.09■□□□□ 0.81
PROM1O43490 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
PROM1O43490 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.09■□□□□ 0.81
PROM1O43490 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PROM1O43490 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
PROM1O43490 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PROM1O43490 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PROM1O43490 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
PROM1O43490 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
PROM1O43490 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.08■□□□□ 0.81
PROM1O43490 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PROM1O43490 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PROM1O43490 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.08■□□□□ 0.81
PROM1O43490 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.08■□□□□ 0.81
PROM1O43490 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PROM1O43490 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PROM1O43490 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PROM1O43490 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.08■□□□□ 0.8
PROM1O43490 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.07■□□□□ 0.8
PROM1O43490 AC123595.1-201ENST00000440769 1046 ntBASIC20.07■□□□□ 0.8
PROM1O43490 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PROM1O43490 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.07■□□□□ 0.8
PROM1O43490 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PROM1O43490 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.06■□□□□ 0.8
PROM1O43490 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
PROM1O43490 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PROM1O43490 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms