Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.55■■□□□ 1.04
RIPK2O43353 AP005212.1-201ENST00000581547 1997 ntBASIC21.55■■□□□ 1.04
RIPK2O43353 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK2O43353 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RIPK2O43353 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK2O43353 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.54■■□□□ 1.04
RIPK2O43353 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK2O43353 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK2O43353 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK2O43353 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK2O43353 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.54■■□□□ 1.04
RIPK2O43353 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK2O43353 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK2O43353 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.53■■□□□ 1.04
RIPK2O43353 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
RIPK2O43353 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK2O43353 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK2O43353 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK2O43353 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK2O43353 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.53■■□□□ 1.04
RIPK2O43353 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK2O43353 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK2O43353 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK2O43353 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK2O43353 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 AC073314.1-201ENST00000568729 2216 ntBASIC21.52■■□□□ 1.04
RIPK2O43353 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.52■■□□□ 1.04
RIPK2O43353 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.52■■□□□ 1.04
RIPK2O43353 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 TSPY9P-201ENST00000440215 945 ntBASIC21.52■■□□□ 1.04
RIPK2O43353 TSPY11P-201ENST00000442607 1045 ntBASIC21.52■■□□□ 1.04
RIPK2O43353 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
RIPK2O43353 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.52■■□□□ 1.04
RIPK2O43353 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK2O43353 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
RIPK2O43353 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
RIPK2O43353 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 OR2I1P-207ENST00000453522 948 ntBASIC21.51■■□□□ 1.03
RIPK2O43353 AC010141.3-201ENST00000456659 717 ntBASIC21.51■■□□□ 1.03
RIPK2O43353 AC087239.1-201ENST00000622671 572 ntBASIC21.51■■□□□ 1.03
RIPK2O43353 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RIPK2O43353 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
RIPK2O43353 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK2O43353 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.5■■□□□ 1.03
RIPK2O43353 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.5■■□□□ 1.03
RIPK2O43353 AC006128.1-201ENST00000624704 1661 ntBASIC21.5■■□□□ 1.03
RIPK2O43353 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.5■■□□□ 1.03
RIPK2O43353 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.5■■□□□ 1.03
RIPK2O43353 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
RIPK2O43353 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.5■■□□□ 1.03
RIPK2O43353 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
RIPK2O43353 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.5■■□□□ 1.03
RIPK2O43353 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RIPK2O43353 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
RIPK2O43353 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
RIPK2O43353 AL034346.1-201ENST00000568244 1277 ntBASIC21.49■■□□□ 1.03
RIPK2O43353 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
RIPK2O43353 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RIPK2O43353 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
RIPK2O43353 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RIPK2O43353 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.48■■□□□ 1.03
RIPK2O43353 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.48■■□□□ 1.03
RIPK2O43353 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RIPK2O43353 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RIPK2O43353 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.48■■□□□ 1.03
RIPK2O43353 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.48■■□□□ 1.03
RIPK2O43353 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.48■■□□□ 1.03
RIPK2O43353 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms