Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SMUG1P1-201ENST00000590640 811 ntBASIC20.6■□□□□ 0.89
UBFD1O14562 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.6■□□□□ 0.89
UBFD1O14562 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBFD1O14562 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBFD1O14562 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.6■□□□□ 0.89
UBFD1O14562 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBFD1O14562 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
UBFD1O14562 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
UBFD1O14562 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.59■□□□□ 0.89
UBFD1O14562 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.59■□□□□ 0.89
UBFD1O14562 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.59■□□□□ 0.89
UBFD1O14562 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.59■□□□□ 0.89
UBFD1O14562 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.59■□□□□ 0.89
UBFD1O14562 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
UBFD1O14562 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
UBFD1O14562 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.58■□□□□ 0.89
UBFD1O14562 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
UBFD1O14562 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.58■□□□□ 0.89
UBFD1O14562 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
UBFD1O14562 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
UBFD1O14562 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
UBFD1O14562 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
UBFD1O14562 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.58■□□□□ 0.88
UBFD1O14562 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
UBFD1O14562 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
UBFD1O14562 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.57■□□□□ 0.88
UBFD1O14562 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.57■□□□□ 0.88
UBFD1O14562 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
UBFD1O14562 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
UBFD1O14562 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
UBFD1O14562 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.57■□□□□ 0.88
UBFD1O14562 AL136116.3-201ENST00000402907 1138 ntBASIC20.57■□□□□ 0.88
UBFD1O14562 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.57■□□□□ 0.88
UBFD1O14562 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.57■□□□□ 0.88
UBFD1O14562 MIR4767-201ENST00000582827 78 ntBASIC20.57■□□□□ 0.88
UBFD1O14562 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.57■□□□□ 0.88
UBFD1O14562 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
UBFD1O14562 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.57■□□□□ 0.88
UBFD1O14562 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.56■□□□□ 0.88
UBFD1O14562 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.56■□□□□ 0.88
UBFD1O14562 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.56■□□□□ 0.88
UBFD1O14562 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
UBFD1O14562 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.56■□□□□ 0.88
UBFD1O14562 BX842568.3-201ENST00000418104 571 ntBASIC20.56■□□□□ 0.88
UBFD1O14562 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.56■□□□□ 0.88
UBFD1O14562 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.56■□□□□ 0.88
UBFD1O14562 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.56■□□□□ 0.88
UBFD1O14562 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.56■□□□□ 0.88
UBFD1O14562 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBFD1O14562 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
UBFD1O14562 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
UBFD1O14562 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.55■□□□□ 0.88
UBFD1O14562 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.55■□□□□ 0.88
UBFD1O14562 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
UBFD1O14562 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBFD1O14562 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBFD1O14562 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
UBFD1O14562 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBFD1O14562 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
UBFD1O14562 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.54■□□□□ 0.88
UBFD1O14562 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBFD1O14562 UNC93B3-201ENST00000308076 687 ntBASIC20.54■□□□□ 0.88
UBFD1O14562 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBFD1O14562 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBFD1O14562 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms