Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AL034346.1-201ENST00000568244 1277 ntBASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 AP004607.7-201ENST00000527152 1677 ntBASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRIM49D1C9J1S8 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 AC092171.4-201ENST00000609130 632 ntBASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 LINC01006-201ENST00000333319 2292 ntBASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
TRIM49D1C9J1S8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM49D1C9J1S8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM49D1C9J1S8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 AL512631.2-201ENST00000604634 923 ntBASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM49D1C9J1S8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 AL035685.1-201ENST00000636663 812 ntBASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms