Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 DUSP8P3-201ENST00000399571 1760 ntBASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 GUSBP5-202ENST00000510805 1989 ntBASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 AC005224.4-201ENST00000583262 1652 ntBASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA3Q9Y5H0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 ECEL1P1-201ENST00000373592 1742 ntBASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA3Q9Y5H0 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 KRT87P-202ENST00000534226 1464 ntBASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 AL109923.1-201ENST00000618799 583 ntBASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHGA3Q9Y5H0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA3Q9Y5H0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.58■□□□□ 0.88
PCDHGA3Q9Y5H0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 ANOS2P-203ENST00000472227 1816 ntBASIC20.57■□□□□ 0.88
PCDHGA3Q9Y5H0 AC007375.3-201ENST00000600936 2314 ntBASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA3Q9Y5H0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 MIR663A-201ENST00000385250 93 ntBASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 MFSD11-216ENST00000590393 1141 ntBASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDHGA3Q9Y5H0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms