Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
TM9SF3Q9HD45 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 GUSBP6-202ENST00000438529 1198 ntBASIC21.27■■□□□ 1
TM9SF3Q9HD45 CD99P1-205ENST00000527459 561 ntBASIC21.27■■□□□ 1
TM9SF3Q9HD45 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.27■■□□□ 1
TM9SF3Q9HD45 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.27■□□□□ 0.99
TM9SF3Q9HD45 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TM9SF3Q9HD45 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 AC010141.2-201ENST00000452426 721 ntBASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TM9SF3Q9HD45 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 EP400NL-214ENST00000641289 2402 ntBASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 AC138907.5-202ENST00000569484 235 ntBASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TM9SF3Q9HD45 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 SLC29A4P1-201ENST00000398760 971 ntBASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 CNN2P6-201ENST00000439038 900 ntBASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 AL138781.1-201ENST00000566567 1274 ntBASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TM9SF3Q9HD45 OR7E47P-201ENST00000546390 1422 ntBASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 KRT18P20-201ENST00000548986 1279 ntBASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 AC010536.3-201ENST00000620306 533 ntBASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 TMEM191A-211ENST00000637163 1067 ntBASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
TM9SF3Q9HD45 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TM9SF3Q9HD45 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms