Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 AC011298.3-201ENST00000615796 283 ntBASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 AC068587.7-201ENST00000641602 218 ntBASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM56Q9BRZ2 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 FEM1AP4-201ENST00000443167 1987 ntBASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM56Q9BRZ2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM56Q9BRZ2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 DUX4L19-201ENST00000557448 1267 ntBASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM56Q9BRZ2 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 AC087239.1-201ENST00000622671 572 ntBASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM56Q9BRZ2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 UNC93B3-201ENST00000308076 687 ntBASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 MIR4767-201ENST00000582827 78 ntBASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM56Q9BRZ2 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
TRIM56Q9BRZ2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.58■■□□□ 1.04
TRIM56Q9BRZ2 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM56Q9BRZ2 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.58■■□□□ 1.04
TRIM56Q9BRZ2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM56Q9BRZ2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM56Q9BRZ2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms