Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.49■□□□□ 0.55
NKX3-1Q99801 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
NKX3-1Q99801 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.49■□□□□ 0.55
NKX3-1Q99801 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NKX3-1Q99801 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
NKX3-1Q99801 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX3-1Q99801 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX3-1Q99801 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX3-1Q99801 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX3-1Q99801 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 AC010525.1-201ENST00000585559 441 ntBASIC18.46■□□□□ 0.55
NKX3-1Q99801 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 OR7E47P-201ENST00000546390 1422 ntBASIC18.46■□□□□ 0.55
NKX3-1Q99801 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX3-1Q99801 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX3-1Q99801 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NKX3-1Q99801 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
NKX3-1Q99801 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.46■□□□□ 0.54
NKX3-1Q99801 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
NKX3-1Q99801 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 AL356740.2-201ENST00000601559 647 ntBASIC18.45■□□□□ 0.54
NKX3-1Q99801 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 AC241377.3-202ENST00000626088 1088 ntBASIC18.45■□□□□ 0.54
NKX3-1Q99801 AC241585.3-202ENST00000628937 1088 ntBASIC18.45■□□□□ 0.54
NKX3-1Q99801 AC245100.8-202ENST00000629247 1058 ntBASIC18.45■□□□□ 0.54
NKX3-1Q99801 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX3-1Q99801 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX3-1Q99801 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NKX3-1Q99801 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 MIR3181-201ENST00000578512 73 ntBASIC18.44■□□□□ 0.54
NKX3-1Q99801 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.44■□□□□ 0.54
NKX3-1Q99801 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms