Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 LINC00565-201ENST00000562710 2331 ntBASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 AC104564.3-201ENST00000582367 638 ntBASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTCHD1Q96NR3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
PTCHD1Q96NR3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 AC004854.2-201ENST00000608450 1441 ntBASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 AP004607.4-201ENST00000530158 1459 ntBASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTCHD1Q96NR3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 KRT87P-202ENST00000534226 1464 ntBASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.02■□□□□ 0.8
PTCHD1Q96NR3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTCHD1Q96NR3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTCHD1Q96NR3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 AC092666.2-201ENST00000613287 246 ntBASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms