Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 AC006015.1-201ENST00000429970 570 ntBASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 AC068473.5-201ENST00000616428 2072 ntBASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 C1orf229-201ENST00000623686 2258 ntBASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLIP3Q96DZ5 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 AC080038.1-201ENST00000611274 1154 ntBASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 KRT87P-202ENST00000534226 1464 ntBASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP3Q96DZ5 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP3Q96DZ5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CLIP3Q96DZ5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLIP3Q96DZ5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
CLIP3Q96DZ5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
CLIP3Q96DZ5 ESRRAP2-201ENST00000418437 1549 ntBASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 BID-214ENST00000617586 542 ntTSL 5 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.39■□□□□ 0.85
CLIP3Q96DZ5 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 AL034346.1-201ENST00000568244 1277 ntBASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.38■□□□□ 0.85
CLIP3Q96DZ5 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 AC104187.1-201ENST00000607510 612 ntBASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 LINC00526-201ENST00000581067 1875 ntBASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP3Q96DZ5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 KRT18P11-201ENST00000435214 1283 ntBASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.36■□□□□ 0.85
CLIP3Q96DZ5 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms