Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 NOC2LP1-202ENST00000452600 2235 ntBASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN3Q8NCR9 AC005332.8-201ENST00000622750 2735 ntBASIC16.96■□□□□ 0.3
CLRN3Q8NCR9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.96■□□□□ 0.3
CLRN3Q8NCR9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLRN3Q8NCR9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLRN3Q8NCR9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.95■□□□□ 0.3
CLRN3Q8NCR9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
CLRN3Q8NCR9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN3Q8NCR9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 AC021231.2-201ENST00000594613 730 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms