Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC60Q8IWA6 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC60Q8IWA6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.75■■□□□ 1.39
CCDC60Q8IWA6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 CROCCP5-201ENST00000436658 830 ntBASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 AC233723.2-201ENST00000623798 2106 ntBASIC23.74■■□□□ 1.39
CCDC60Q8IWA6 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 KRT18P20-201ENST00000548986 1279 ntBASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 DUX4L16-201ENST00000555130 1264 ntBASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC60Q8IWA6 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 FAM99A-202ENST00000538190 1989 ntBASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC60Q8IWA6 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 ID1-201ENST00000376105 1233 ntBASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 SLC7A5P2-201ENST00000553010 536 ntBASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 GUSBP5-202ENST00000510805 1989 ntBASIC23.71■■□□□ 1.39
CCDC60Q8IWA6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
CCDC60Q8IWA6 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
CCDC60Q8IWA6 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CCDC60Q8IWA6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 AC010542.4-201ENST00000563151 1910 ntBASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 AC242852.2-201ENST00000615738 1807 ntBASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC60Q8IWA6 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms