Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDKL3Q8IVW4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.85■■□□□ 1.09
CDKL3Q8IVW4 AP001330.3-201ENST00000520123 633 ntBASIC21.85■■□□□ 1.09
CDKL3Q8IVW4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 TSPY26P-201ENST00000476365 1326 ntBASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.84■■□□□ 1.09
CDKL3Q8IVW4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 AC110285.6-201ENST00000617652 491 ntBASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.83■■□□□ 1.09
CDKL3Q8IVW4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CDKL3Q8IVW4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CDKL3Q8IVW4 FEM1AP4-201ENST00000443167 1987 ntBASIC21.83■■□□□ 1.08
CDKL3Q8IVW4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.83■■□□□ 1.08
CDKL3Q8IVW4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 AL355001.2-201ENST00000620617 1191 ntBASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDKL3Q8IVW4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 AC105233.4-201ENST00000642045 216 ntBASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 AC005229.4-201ENST00000610085 2198 ntBASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDKL3Q8IVW4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 AF213884.3-201ENST00000563833 479 ntBASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 AC009237.3-201ENST00000393279 1427 ntBASIC21.8■■□□□ 1.08
CDKL3Q8IVW4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 RASA4CP-201ENST00000424092 1398 ntBASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 MIR939-201ENST00000401314 82 ntBASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDKL3Q8IVW4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms