Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM40Q6P9F5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM40Q6P9F5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM40Q6P9F5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM40Q6P9F5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 AC009237.3-201ENST00000393279 1427 ntBASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM40Q6P9F5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM40Q6P9F5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM40Q6P9F5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM40Q6P9F5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM40Q6P9F5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 AC010542.4-201ENST00000563151 1910 ntBASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM40Q6P9F5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 ZNRF2P3-201ENST00000424200 374 ntBASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 MIR6084-201ENST00000622012 110 ntBASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 AP006587.3-201ENST00000525742 1516 ntBASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM40Q6P9F5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM40Q6P9F5 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM40Q6P9F5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 AC027612.3-201ENST00000413684 1047 ntBASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 AC005224.4-201ENST00000583262 1652 ntBASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms