Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.71■■□□□ 1.55
CCDC144BQ3MJ40 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.55
CCDC144BQ3MJ40 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.7■■□□□ 1.55
CCDC144BQ3MJ40 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC144BQ3MJ40 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC144BQ3MJ40 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.7■■□□□ 1.54
CCDC144BQ3MJ40 WWOX-218ENST00000627394 894 ntTSL 5 BASIC24.7■■□□□ 1.54
CCDC144BQ3MJ40 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC24.69■■□□□ 1.54
CCDC144BQ3MJ40 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 OXCT2P1-201ENST00000447263 1535 ntBASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC144BQ3MJ40 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CCDC144BQ3MJ40 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 C11orf96-202ENST00000528572 1834 ntBASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CCDC144BQ3MJ40 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 FBXW4P1-201ENST00000426721 2239 ntBASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC144BQ3MJ40 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 AC080038.3-201ENST00000623346 1952 ntBASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 CROCCP5-201ENST00000436658 830 ntBASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 AC079140.4-201ENST00000507448 529 ntBASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CCDC144BQ3MJ40 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC144BQ3MJ40 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC144BQ3MJ40 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.64■■□□□ 1.53
CCDC144BQ3MJ40 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC144BQ3MJ40 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 AC104771.1-201ENST00000603335 964 ntBASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms