Protein–RNA interactions for Protein: Q3KNW1

SNAI3, Zinc finger protein SNAI3, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNAI3Q3KNW1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 AC142381.2-201ENST00000566120 298 ntBASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SNAI3Q3KNW1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 AC005229.4-201ENST00000610085 2198 ntBASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SNAI3Q3KNW1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 AC005837.3-201ENST00000612163 286 ntBASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.43■□□□□ 0.54
SNAI3Q3KNW1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 AF106564.1-201ENST00000607058 2553 ntBASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNAI3Q3KNW1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 AC009237.3-201ENST00000393279 1427 ntBASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 BX005040.4-201ENST00000637145 1518 ntBASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 FEM1AP4-201ENST00000443167 1987 ntBASIC18.41■□□□□ 0.54
SNAI3Q3KNW1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNAI3Q3KNW1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms