Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC29.83■■■□□ 2.37
MSH6P52701 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH6P52701 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH6P52701 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
MSH6P52701 GATS-209ENST00000454084 1030 ntTSL 3 BASIC29.82■■■□□ 2.36
MSH6P52701 RPS20-210ENST00000523936 899 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH6P52701 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC29.82■■■□□ 2.36
MSH6P52701 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC29.82■■■□□ 2.36
MSH6P52701 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH6P52701 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH6P52701 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
MSH6P52701 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH6P52701 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
MSH6P52701 AC142381.3-201ENST00000568208 1670 ntBASIC29.81■■■□□ 2.36
MSH6P52701 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH6P52701 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH6P52701 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH6P52701 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH6P52701 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH6P52701 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC29.81■■■□□ 2.36
MSH6P52701 AL591742.1-201ENST00000604433 565 ntBASIC29.81■■■□□ 2.36
MSH6P52701 AC120498.10-201ENST00000621827 505 ntBASIC29.81■■■□□ 2.36
MSH6P52701 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
MSH6P52701 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
MSH6P52701 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH6P52701 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC29.81■■■□□ 2.36
MSH6P52701 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH6P52701 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC29.8■■■□□ 2.36
MSH6P52701 C1QBPP2-201ENST00000528754 825 ntBASIC29.8■■■□□ 2.36
MSH6P52701 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
MSH6P52701 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC29.8■■■□□ 2.36
MSH6P52701 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
MSH6P52701 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
MSH6P52701 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
MSH6P52701 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
MSH6P52701 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
MSH6P52701 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
MSH6P52701 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
MSH6P52701 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC29.79■■■□□ 2.36
MSH6P52701 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC29.79■■■□□ 2.36
MSH6P52701 Z99916.2-201ENST00000604037 246 ntBASIC29.79■■■□□ 2.36
MSH6P52701 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC29.78■■■□□ 2.36
MSH6P52701 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
MSH6P52701 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC29.78■■■□□ 2.36
MSH6P52701 KRT18P21-201ENST00000515767 1272 ntBASIC29.78■■■□□ 2.36
MSH6P52701 AC079089.2-201ENST00000531211 1277 ntBASIC29.78■■■□□ 2.36
MSH6P52701 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC29.78■■■□□ 2.36
MSH6P52701 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC29.78■■■□□ 2.36
MSH6P52701 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC29.78■■■□□ 2.36
MSH6P52701 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC29.78■■■□□ 2.36
MSH6P52701 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
MSH6P52701 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
MSH6P52701 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC29.77■■■□□ 2.36
MSH6P52701 AC060766.5-201ENST00000590539 871 ntBASIC29.77■■■□□ 2.36
MSH6P52701 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
MSH6P52701 CYP2T3P-201ENST00000601990 817 ntBASIC29.77■■■□□ 2.36
MSH6P52701 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC29.77■■■□□ 2.36
MSH6P52701 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 FGF8-207ENST00000618991 856 ntTSL 3 BASIC29.77■■■□□ 2.36
MSH6P52701 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.77■■■□□ 2.36
MSH6P52701 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
MSH6P52701 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC29.77■■■□□ 2.36
MSH6P52701 LSM12P1-201ENST00000411836 588 ntBASIC29.77■■■□□ 2.36
MSH6P52701 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC29.77■■■□□ 2.36
MSH6P52701 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC29.77■■■□□ 2.36
MSH6P52701 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
MSH6P52701 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.36
MSH6P52701 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.36
MSH6P52701 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC29.76■■■□□ 2.35
MSH6P52701 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC29.76■■■□□ 2.35
MSH6P52701 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
MSH6P52701 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC29.76■■■□□ 2.35
MSH6P52701 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
MSH6P52701 RBM17P2-201ENST00000616397 1405 ntBASIC29.75■■■□□ 2.35
MSH6P52701 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
MSH6P52701 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
MSH6P52701 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC29.75■■■□□ 2.35
MSH6P52701 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC29.75■■■□□ 2.35
MSH6P52701 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC29.74■■■□□ 2.35
MSH6P52701 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
MSH6P52701 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
MSH6P52701 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC29.74■■■□□ 2.35
MSH6P52701 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
MSH6P52701 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC29.74■■■□□ 2.35
MSH6P52701 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC29.74■■■□□ 2.35
MSH6P52701 PBX1-209ENST00000485769 834 ntTSL 2 BASIC29.74■■■□□ 2.35
MSH6P52701 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC29.74■■■□□ 2.35
MSH6P52701 AC008175.2-201ENST00000612840 297 ntBASIC29.74■■■□□ 2.35
MSH6P52701 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC29.74■■■□□ 2.35
MSH6P52701 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
MSH6P52701 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
MSH6P52701 H19-210ENST00000439725 1929 ntTSL 2 BASIC29.73■■■□□ 2.35
MSH6P52701 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
MSH6P52701 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC29.73■■■□□ 2.35
MSH6P52701 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC29.73■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms