Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.81■□□□□ 0.92
SHMT2P34897 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.81■□□□□ 0.92
SHMT2P34897 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 SLC25A24-204ENST00000569674 2357 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L2-201ENST00000561772 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L6-201ENST00000626483 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L1-201ENST00000627662 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L8-201ENST00000629013 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L3-201ENST00000630187 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L7-201ENST00000630678 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 DUX4L5-201ENST00000630834 1275 ntBASIC20.8■□□□□ 0.92
SHMT2P34897 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.8■□□□□ 0.92
SHMT2P34897 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SHMT2P34897 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHMT2P34897 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.8■□□□□ 0.92
SHMT2P34897 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.79■□□□□ 0.92
SHMT2P34897 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.79■□□□□ 0.92
SHMT2P34897 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SHMT2P34897 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
SHMT2P34897 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
SHMT2P34897 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.79■□□□□ 0.92
SHMT2P34897 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.79■□□□□ 0.92
SHMT2P34897 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHMT2P34897 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.79■□□□□ 0.92
SHMT2P34897 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SHMT2P34897 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SHMT2P34897 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.78■□□□□ 0.92
SHMT2P34897 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.78■□□□□ 0.92
SHMT2P34897 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.78■□□□□ 0.92
SHMT2P34897 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.78■□□□□ 0.92
SHMT2P34897 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.78■□□□□ 0.92
SHMT2P34897 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.78■□□□□ 0.92
SHMT2P34897 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.78■□□□□ 0.92
SHMT2P34897 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHMT2P34897 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.77■□□□□ 0.92
SHMT2P34897 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.77■□□□□ 0.92
SHMT2P34897 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.77■□□□□ 0.92
SHMT2P34897 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.77■□□□□ 0.92
SHMT2P34897 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.77■□□□□ 0.92
SHMT2P34897 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.77■□□□□ 0.92
SHMT2P34897 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.77■□□□□ 0.92
SHMT2P34897 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHMT2P34897 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.77■□□□□ 0.91
SHMT2P34897 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.76■□□□□ 0.91
SHMT2P34897 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SHMT2P34897 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SHMT2P34897 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.76■□□□□ 0.91
SHMT2P34897 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.76■□□□□ 0.91
SHMT2P34897 AC079140.4-201ENST00000507448 529 ntBASIC20.76■□□□□ 0.91
SHMT2P34897 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.76■□□□□ 0.91
SHMT2P34897 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.76■□□□□ 0.91
SHMT2P34897 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHMT2P34897 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SHMT2P34897 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.75■□□□□ 0.91
SHMT2P34897 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHMT2P34897 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms