Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PTPN4P29074 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.24■□□□□ 0.99
PTPN4P29074 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
PTPN4P29074 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.24■□□□□ 0.99
PTPN4P29074 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTPN4P29074 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
PTPN4P29074 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
PTPN4P29074 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
PTPN4P29074 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
PTPN4P29074 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
PTPN4P29074 RNF165-205ENST00000588679 2904 ntBASIC21.23■□□□□ 0.99
PTPN4P29074 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTPN4P29074 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PTPN4P29074 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PTPN4P29074 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.22■□□□□ 0.99
PTPN4P29074 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
PTPN4P29074 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
PTPN4P29074 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN4P29074 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN4P29074 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN4P29074 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN4P29074 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN4P29074 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.22■□□□□ 0.99
PTPN4P29074 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.22■□□□□ 0.99
PTPN4P29074 AC233992.3-201ENST00000607491 485 ntBASIC21.22■□□□□ 0.99
PTPN4P29074 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN4P29074 MIR6821-201ENST00000617625 74 ntBASIC21.22■□□□□ 0.99
PTPN4P29074 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTPN4P29074 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.22■□□□□ 0.99
PTPN4P29074 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
PTPN4P29074 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
PTPN4P29074 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN4P29074 IRS3P-201ENST00000223076 1006 ntBASIC21.21■□□□□ 0.99
PTPN4P29074 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN4P29074 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.21■□□□□ 0.99
PTPN4P29074 BX842568.3-201ENST00000418104 571 ntBASIC21.21■□□□□ 0.99
PTPN4P29074 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN4P29074 AC097381.1-201ENST00000429019 1296 ntBASIC21.21■□□□□ 0.99
PTPN4P29074 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN4P29074 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN4P29074 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN4P29074 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PTPN4P29074 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN4P29074 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
PTPN4P29074 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PTPN4P29074 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN4P29074 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN4P29074 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN4P29074 AC104564.3-201ENST00000582367 638 ntBASIC21.2■□□□□ 0.98
PTPN4P29074 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN4P29074 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.2■□□□□ 0.98
PTPN4P29074 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
PTPN4P29074 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN4P29074 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PTPN4P29074 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN4P29074 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN4P29074 Z98882.1-201ENST00000622160 2253 ntBASIC21.2■□□□□ 0.98
PTPN4P29074 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PTPN4P29074 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PTPN4P29074 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PTPN4P29074 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN4P29074 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 FEM1AP4-201ENST00000443167 1987 ntBASIC21.19■□□□□ 0.98
PTPN4P29074 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 AF106564.1-201ENST00000607058 2553 ntBASIC21.19■□□□□ 0.98
PTPN4P29074 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN4P29074 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PTPN4P29074 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN4P29074 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN4P29074 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms