Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
COL8A1P27658 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.64■□□□□ 0.57
COL8A1P27658 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.63■□□□□ 0.57
COL8A1P27658 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.63■□□□□ 0.57
COL8A1P27658 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.63■□□□□ 0.57
COL8A1P27658 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.63■□□□□ 0.57
COL8A1P27658 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.63■□□□□ 0.57
COL8A1P27658 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.63■□□□□ 0.57
COL8A1P27658 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.63■□□□□ 0.57
COL8A1P27658 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.63■□□□□ 0.57
COL8A1P27658 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.63■□□□□ 0.57
COL8A1P27658 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL8A1P27658 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL8A1P27658 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
COL8A1P27658 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.62■□□□□ 0.57
COL8A1P27658 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
COL8A1P27658 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.62■□□□□ 0.57
COL8A1P27658 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.62■□□□□ 0.57
COL8A1P27658 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.62■□□□□ 0.57
COL8A1P27658 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.62■□□□□ 0.57
COL8A1P27658 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.62■□□□□ 0.57
COL8A1P27658 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL8A1P27658 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL8A1P27658 AC010980.2-201ENST00000587099 1412 ntBASIC18.61■□□□□ 0.57
COL8A1P27658 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL8A1P27658 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.61■□□□□ 0.57
COL8A1P27658 AC008403.3-201ENST00000598924 454 ntBASIC18.61■□□□□ 0.57
COL8A1P27658 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL8A1P27658 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL8A1P27658 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.6■□□□□ 0.57
COL8A1P27658 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.6■□□□□ 0.57
COL8A1P27658 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL8A1P27658 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.6■□□□□ 0.57
COL8A1P27658 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL8A1P27658 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.59■□□□□ 0.57
COL8A1P27658 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.59■□□□□ 0.57
COL8A1P27658 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.59■□□□□ 0.57
COL8A1P27658 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.59■□□□□ 0.57
COL8A1P27658 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.59■□□□□ 0.57
COL8A1P27658 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL8A1P27658 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL8A1P27658 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.59■□□□□ 0.57
COL8A1P27658 AL353803.4-201ENST00000565882 1934 ntBASIC18.59■□□□□ 0.57
COL8A1P27658 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL8A1P27658 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.58■□□□□ 0.57
COL8A1P27658 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL8A1P27658 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms