Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LIMS3P0CW19 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIMS3P0CW19 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LIMS3P0CW19 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LIMS3P0CW19 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMS3P0CW19 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMS3P0CW19 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 Z92544.1-202ENST00000571933 1220 ntBASIC18.9■□□□□ 0.62
LIMS3P0CW19 AC241377.3-202ENST00000626088 1088 ntBASIC18.9■□□□□ 0.62
LIMS3P0CW19 AC241585.3-202ENST00000628937 1088 ntBASIC18.9■□□□□ 0.62
LIMS3P0CW19 AC245100.8-202ENST00000629247 1058 ntBASIC18.9■□□□□ 0.62
LIMS3P0CW19 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMS3P0CW19 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
LIMS3P0CW19 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMS3P0CW19 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMS3P0CW19 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMS3P0CW19 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMS3P0CW19 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LIMS3P0CW19 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 AC010997.5-201ENST00000609182 354 ntBASIC18.89■□□□□ 0.61
LIMS3P0CW19 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMS3P0CW19 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LIMS3P0CW19 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
LIMS3P0CW19 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMS3P0CW19 KRT125P-201ENST00000546827 989 ntBASIC18.88■□□□□ 0.61
LIMS3P0CW19 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 AC068587.7-201ENST00000641602 218 ntBASIC18.88■□□□□ 0.61
LIMS3P0CW19 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMS3P0CW19 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMS3P0CW19 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 AC006455.2-201ENST00000429931 906 ntBASIC18.87■□□□□ 0.61
LIMS3P0CW19 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LIMS3P0CW19 AC003102.1-202ENST00000563394 1796 ntBASIC18.87■□□□□ 0.61
LIMS3P0CW19 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
LIMS3P0CW19 AL117332.1-201ENST00000622628 974 ntBASIC18.87■□□□□ 0.61
LIMS3P0CW19 GABARAPL3-202ENST00000624044 1851 ntBASIC18.87■□□□□ 0.61
LIMS3P0CW19 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LIMS3P0CW19 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMS3P0CW19 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMS3P0CW19 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMS3P0CW19 AP005212.1-201ENST00000581547 1997 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMS3P0CW19 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMS3P0CW19 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMS3P0CW19 MIR4787-201ENST00000607364 84 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 pRNA.6-201ENST00000610482 90 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 pRNA.5-201ENST00000612139 90 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 pRNA.11-201ENST00000618423 90 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 pRNA.13-201ENST00000619112 90 ntBASIC18.86■□□□□ 0.61
LIMS3P0CW19 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms