Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.35■■□□□ 1.33
TPM1P09493 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
TPM1P09493 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.35■■□□□ 1.33
TPM1P09493 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.35■■□□□ 1.33
TPM1P09493 AC068587.7-201ENST00000641602 218 ntBASIC23.35■■□□□ 1.33
TPM1P09493 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
TPM1P09493 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.35■■□□□ 1.33
TPM1P09493 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TPM1P09493 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
TPM1P09493 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.34■■□□□ 1.33
TPM1P09493 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC23.34■■□□□ 1.33
TPM1P09493 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.34■■□□□ 1.33
TPM1P09493 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TPM1P09493 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
TPM1P09493 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
TPM1P09493 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
TPM1P09493 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
TPM1P09493 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC23.33■■□□□ 1.33
TPM1P09493 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TPM1P09493 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
TPM1P09493 AC239859.2-201ENST00000444165 318 ntBASIC23.33■■□□□ 1.33
TPM1P09493 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.33■■□□□ 1.33
TPM1P09493 AL451085.2-201ENST00000605085 799 ntBASIC23.33■■□□□ 1.33
TPM1P09493 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TPM1P09493 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
TPM1P09493 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.33■■□□□ 1.32
TPM1P09493 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.33■■□□□ 1.32
TPM1P09493 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
TPM1P09493 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
TPM1P09493 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.32■■□□□ 1.32
TPM1P09493 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TPM1P09493 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
TPM1P09493 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.32■■□□□ 1.32
TPM1P09493 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
TPM1P09493 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.32■■□□□ 1.32
TPM1P09493 AC087239.1-201ENST00000622671 572 ntBASIC23.32■■□□□ 1.32
TPM1P09493 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
TPM1P09493 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
TPM1P09493 AC026471.6-201ENST00000622954 1905 ntBASIC23.31■■□□□ 1.32
TPM1P09493 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.31■■□□□ 1.32
TPM1P09493 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TPM1P09493 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.31■■□□□ 1.32
TPM1P09493 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
TPM1P09493 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.31■■□□□ 1.32
TPM1P09493 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.31■■□□□ 1.32
TPM1P09493 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TPM1P09493 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.31■■□□□ 1.32
TPM1P09493 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TPM1P09493 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TPM1P09493 OXCT2P1-201ENST00000447263 1535 ntBASIC23.3■■□□□ 1.32
TPM1P09493 pRNA.6-201ENST00000610482 90 ntBASIC23.3■■□□□ 1.32
TPM1P09493 pRNA.5-201ENST00000612139 90 ntBASIC23.3■■□□□ 1.32
TPM1P09493 MIR6724-1-201ENST00000616420 92 ntBASIC23.3■■□□□ 1.32
TPM1P09493 MIR6724-2-201ENST00000616483 92 ntBASIC23.3■■□□□ 1.32
TPM1P09493 MIR6724-4-201ENST00000617390 92 ntBASIC23.3■■□□□ 1.32
TPM1P09493 pRNA.11-201ENST00000618423 90 ntBASIC23.3■■□□□ 1.32
TPM1P09493 pRNA.13-201ENST00000619112 90 ntBASIC23.3■■□□□ 1.32
TPM1P09493 MIR6724-3-201ENST00000622482 92 ntBASIC23.3■■□□□ 1.32
TPM1P09493 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
TPM1P09493 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
TPM1P09493 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.3■■□□□ 1.32
TPM1P09493 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TPM1P09493 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.29■■□□□ 1.32
TPM1P09493 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.29■■□□□ 1.32
TPM1P09493 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TPM1P09493 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.28■■□□□ 1.32
TPM1P09493 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.28■■□□□ 1.32
TPM1P09493 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
TPM1P09493 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.28■■□□□ 1.32
TPM1P09493 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TPM1P09493 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms