Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HOXC4P09017 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC4P09017 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC4P09017 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC4P09017 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC4P09017 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
HOXC4P09017 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXC4P09017 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
HOXC4P09017 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC4P09017 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
HOXC4P09017 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC4P09017 AC007322.1-201ENST00000426983 750 ntBASIC20.88■□□□□ 0.93
HOXC4P09017 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
HOXC4P09017 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC4P09017 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC4P09017 SLC7A5P2-201ENST00000553010 536 ntBASIC20.88■□□□□ 0.93
HOXC4P09017 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC4P09017 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC4P09017 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC4P09017 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC4P09017 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
HOXC4P09017 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HOXC4P09017 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC4P09017 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC4P09017 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXC4P09017 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXC4P09017 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HOXC4P09017 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC4P09017 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC4P09017 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXC4P09017 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC4P09017 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXC4P09017 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC4P09017 NCF1B-203ENST00000435988 1254 ntBASIC20.86■□□□□ 0.93
HOXC4P09017 AC006970.2-201ENST00000450065 779 ntBASIC20.86■□□□□ 0.93
HOXC4P09017 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC4P09017 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXC4P09017 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
HOXC4P09017 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 KRT16P2-201ENST00000414673 1423 ntBASIC20.86■□□□□ 0.93
HOXC4P09017 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC4P09017 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HOXC4P09017 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXC4P09017 AC242852.2-201ENST00000615738 1807 ntBASIC20.85■□□□□ 0.93
HOXC4P09017 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC4P09017 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
HOXC4P09017 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HOXC4P09017 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.85■□□□□ 0.93
HOXC4P09017 TERF1P5-201ENST00000477545 1207 ntBASIC20.85■□□□□ 0.93
HOXC4P09017 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXC4P09017 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC4P09017 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC4P09017 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC4P09017 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC4P09017 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
HOXC4P09017 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HOXC4P09017 CNN2P6-201ENST00000439038 900 ntBASIC20.84■□□□□ 0.93
HOXC4P09017 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC4P09017 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 AC007322.4-201ENST00000509611 723 ntBASIC20.84■□□□□ 0.93
HOXC4P09017 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXC4P09017 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.84■□□□□ 0.93
HOXC4P09017 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.84■□□□□ 0.93
HOXC4P09017 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HOXC4P09017 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXC4P09017 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
HOXC4P09017 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC4P09017 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXC4P09017 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC4P09017 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXC4P09017 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.83■□□□□ 0.93
HOXC4P09017 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC4P09017 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.83■□□□□ 0.93
HOXC4P09017 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC4P09017 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.83■□□□□ 0.93
HOXC4P09017 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXC4P09017 AC013268.1-206ENST00000638368 961 ntBASIC20.83■□□□□ 0.93
HOXC4P09017 AC112229.1-201ENST00000639295 961 ntBASIC20.83■□□□□ 0.93
HOXC4P09017 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.83■□□□□ 0.92
HOXC4P09017 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
HOXC4P09017 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
HOXC4P09017 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms