Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DUX4L4-201ENST00000566884 1269 ntBASIC21.32■■□□□ 1
VIMP08670 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.32■■□□□ 1
VIMP08670 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VIMP08670 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
VIMP08670 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VIMP08670 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VIMP08670 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.31■■□□□ 1
VIMP08670 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.31■■□□□ 1
VIMP08670 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 OXCT2P1-201ENST00000447263 1535 ntBASIC21.31■■□□□ 1
VIMP08670 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VIMP08670 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.31■■□□□ 1
VIMP08670 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.31■■□□□ 1
VIMP08670 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.31■■□□□ 1
VIMP08670 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.3■■□□□ 1
VIMP08670 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VIMP08670 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
VIMP08670 PCDHAC2-203ENST00000615316 3011 ntBASIC21.3■■□□□ 1
VIMP08670 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.3■■□□□ 1
VIMP08670 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
VIMP08670 THA1P-201ENST00000590384 1145 ntBASIC21.3■■□□□ 1
VIMP08670 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
VIMP08670 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
VIMP08670 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VIMP08670 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.3■■□□□ 1
VIMP08670 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VIMP08670 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VIMP08670 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.29■■□□□ 1
VIMP08670 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.29■■□□□ 1
VIMP08670 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VIMP08670 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
VIMP08670 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VIMP08670 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.29■■□□□ 1
VIMP08670 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
VIMP08670 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.28■■□□□ 1
VIMP08670 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.28■■□□□ 1
VIMP08670 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VIMP08670 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.28■■□□□ 1
VIMP08670 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.28■■□□□ 1
VIMP08670 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
VIMP08670 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
VIMP08670 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
VIMP08670 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.28■■□□□ 1
VIMP08670 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.27■■□□□ 1
VIMP08670 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.27■■□□□ 1
VIMP08670 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
VIMP08670 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.27■■□□□ 1
VIMP08670 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.27■■□□□ 1
VIMP08670 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.27■■□□□ 1
VIMP08670 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
VIMP08670 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VIMP08670 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VIMP08670 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
VIMP08670 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.26■□□□□ 0.99
VIMP08670 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
VIMP08670 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.26■□□□□ 0.99
VIMP08670 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
VIMP08670 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.26■□□□□ 0.99
VIMP08670 AC129492.7-201ENST00000622992 756 ntBASIC21.26■□□□□ 0.99
VIMP08670 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
VIMP08670 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.26■□□□□ 0.99
VIMP08670 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VIMP08670 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms