Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.03■■□□□ 1.92
CACNA1FO60840 RARG-204ENST00000543726 1779 ntTSL 2 BASIC27.03■■□□□ 1.92
CACNA1FO60840 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC27.03■■□□□ 1.92
CACNA1FO60840 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC27.03■■□□□ 1.92
CACNA1FO60840 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC27.03■■□□□ 1.92
CACNA1FO60840 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CACNA1FO60840 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
CACNA1FO60840 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC27.02■■□□□ 1.92
CACNA1FO60840 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC27.02■■□□□ 1.92
CACNA1FO60840 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC27.02■■□□□ 1.92
CACNA1FO60840 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
CACNA1FO60840 CNN2P6-201ENST00000439038 900 ntBASIC27.01■■□□□ 1.91
CACNA1FO60840 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.01■■□□□ 1.91
CACNA1FO60840 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC27.01■■□□□ 1.91
CACNA1FO60840 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC27.01■■□□□ 1.91
CACNA1FO60840 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CACNA1FO60840 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
CACNA1FO60840 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC27.01■■□□□ 1.91
CACNA1FO60840 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CACNA1FO60840 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CACNA1FO60840 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27■■□□□ 1.91
CACNA1FO60840 GAS2L1P2-201ENST00000436355 1356 ntBASIC27■■□□□ 1.91
CACNA1FO60840 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CACNA1FO60840 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CACNA1FO60840 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
CACNA1FO60840 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27■■□□□ 1.91
CACNA1FO60840 AL137784.2-201ENST00000607332 1000 ntBASIC27■■□□□ 1.91
CACNA1FO60840 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
CACNA1FO60840 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.99■■□□□ 1.91
CACNA1FO60840 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 NAA20-201ENST00000310450 920 ntTSL 2 BASIC26.99■■□□□ 1.91
CACNA1FO60840 POU5F1P4-201ENST00000413175 1085 ntBASIC26.99■■□□□ 1.91
CACNA1FO60840 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.99■■□□□ 1.91
CACNA1FO60840 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC26.99■■□□□ 1.91
CACNA1FO60840 DUX4L16-201ENST00000555130 1264 ntBASIC26.99■■□□□ 1.91
CACNA1FO60840 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC26.99■■□□□ 1.91
CACNA1FO60840 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC26.99■■□□□ 1.91
CACNA1FO60840 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
CACNA1FO60840 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC26.99■■□□□ 1.91
CACNA1FO60840 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.98■■□□□ 1.91
CACNA1FO60840 VPS53-216ENST00000574029 585 ntTSL 4 BASIC26.98■■□□□ 1.91
CACNA1FO60840 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
CACNA1FO60840 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
CACNA1FO60840 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
CACNA1FO60840 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC26.98■■□□□ 1.91
CACNA1FO60840 TFG-210ENST00000620299 1289 ntTSL 5 BASIC26.98■■□□□ 1.91
CACNA1FO60840 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.98■■□□□ 1.91
CACNA1FO60840 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC26.98■■□□□ 1.91
CACNA1FO60840 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
CACNA1FO60840 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC26.97■■□□□ 1.91
CACNA1FO60840 AC008175.2-201ENST00000612840 297 ntBASIC26.97■■□□□ 1.91
CACNA1FO60840 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC26.97■■□□□ 1.91
CACNA1FO60840 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CACNA1FO60840 RAP2CP1-201ENST00000605103 478 ntBASIC26.97■■□□□ 1.91
CACNA1FO60840 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CACNA1FO60840 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC26.96■■□□□ 1.91
CACNA1FO60840 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CACNA1FO60840 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.96■■□□□ 1.91
CACNA1FO60840 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CACNA1FO60840 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
CACNA1FO60840 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.96■■□□□ 1.91
CACNA1FO60840 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC26.96■■□□□ 1.91
CACNA1FO60840 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC26.96■■□□□ 1.91
CACNA1FO60840 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC26.96■■□□□ 1.91
CACNA1FO60840 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.96■■□□□ 1.91
CACNA1FO60840 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.96■■□□□ 1.91
CACNA1FO60840 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC26.96■■□□□ 1.91
CACNA1FO60840 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC26.95■■□□□ 1.91
CACNA1FO60840 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC26.95■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms