Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PROM1O43490 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
PROM1O43490 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PROM1O43490 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.19■□□□□ 0.82
PROM1O43490 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.19■□□□□ 0.82
PROM1O43490 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.19■□□□□ 0.82
PROM1O43490 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PROM1O43490 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
PROM1O43490 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.18■□□□□ 0.82
PROM1O43490 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 AC026271.2-201ENST00000428091 497 ntBASIC20.18■□□□□ 0.82
PROM1O43490 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PROM1O43490 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 MIR6084-201ENST00000622012 110 ntBASIC20.18■□□□□ 0.82
PROM1O43490 AC005224.4-201ENST00000583262 1652 ntBASIC20.18■□□□□ 0.82
PROM1O43490 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.18■□□□□ 0.82
PROM1O43490 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PROM1O43490 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.18■□□□□ 0.82
PROM1O43490 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.17■□□□□ 0.82
PROM1O43490 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PROM1O43490 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
PROM1O43490 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 AC003102.1-202ENST00000563394 1796 ntBASIC20.17■□□□□ 0.82
PROM1O43490 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.17■□□□□ 0.82
PROM1O43490 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
PROM1O43490 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PROM1O43490 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.16■□□□□ 0.82
PROM1O43490 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PROM1O43490 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PROM1O43490 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PROM1O43490 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 AC055733.4-201ENST00000638462 1354 ntBASIC20.16■□□□□ 0.82
PROM1O43490 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.16■□□□□ 0.82
PROM1O43490 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PROM1O43490 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.15■□□□□ 0.82
PROM1O43490 AC027612.3-201ENST00000413684 1047 ntBASIC20.15■□□□□ 0.82
PROM1O43490 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.15■□□□□ 0.82
PROM1O43490 TPRG1LP1-201ENST00000598702 760 ntBASIC20.15■□□□□ 0.82
PROM1O43490 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.15■□□□□ 0.82
PROM1O43490 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PROM1O43490 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PROM1O43490 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PROM1O43490 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PROM1O43490 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.14■□□□□ 0.81
PROM1O43490 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PROM1O43490 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.14■□□□□ 0.81
PROM1O43490 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.14■□□□□ 0.81
PROM1O43490 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PROM1O43490 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.13■□□□□ 0.81
PROM1O43490 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.13■□□□□ 0.81
PROM1O43490 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
PROM1O43490 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PROM1O43490 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PROM1O43490 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms