Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.76■■□□□ 1.07
CBX4O00257 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
CBX4O00257 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.76■■□□□ 1.07
CBX4O00257 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.76■■□□□ 1.07
CBX4O00257 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
CBX4O00257 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 AC026471.6-201ENST00000622954 1905 ntBASIC21.76■■□□□ 1.07
CBX4O00257 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CBX4O00257 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CBX4O00257 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CBX4O00257 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CBX4O00257 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CBX4O00257 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.75■■□□□ 1.07
CBX4O00257 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.75■■□□□ 1.07
CBX4O00257 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CBX4O00257 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.74■■□□□ 1.07
CBX4O00257 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.74■■□□□ 1.07
CBX4O00257 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.74■■□□□ 1.07
CBX4O00257 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 AC104187.1-201ENST00000607510 612 ntBASIC21.74■■□□□ 1.07
CBX4O00257 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CBX4O00257 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
CBX4O00257 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.74■■□□□ 1.07
CBX4O00257 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CBX4O00257 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.73■■□□□ 1.07
CBX4O00257 KRT19P1-201ENST00000405746 1186 ntBASIC21.73■■□□□ 1.07
CBX4O00257 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.73■■□□□ 1.07
CBX4O00257 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.73■■□□□ 1.07
CBX4O00257 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CBX4O00257 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.73■■□□□ 1.07
CBX4O00257 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CBX4O00257 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CBX4O00257 AC003102.1-202ENST00000563394 1796 ntBASIC21.72■■□□□ 1.07
CBX4O00257 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CBX4O00257 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CBX4O00257 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CBX4O00257 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CBX4O00257 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.72■■□□□ 1.07
CBX4O00257 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CBX4O00257 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CBX4O00257 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
CBX4O00257 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 ID1-201ENST00000376105 1233 ntBASIC21.71■■□□□ 1.07
CBX4O00257 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.71■■□□□ 1.07
CBX4O00257 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 EP400NL-214ENST00000641289 2402 ntBASIC21.71■■□□□ 1.07
CBX4O00257 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CBX4O00257 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CBX4O00257 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CBX4O00257 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CBX4O00257 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.7■■□□□ 1.07
CBX4O00257 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
CBX4O00257 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CBX4O00257 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CBX4O00257 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CBX4O00257 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.7■■□□□ 1.06
CBX4O00257 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CBX4O00257 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms