Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 C9orf163-202ENST00000624034 2573 ntBASIC17.34■□□□□ 0.37
TRAV40A0A0B4J280 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 AC012676.1-201ENST00000574705 1949 ntBASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV40A0A0B4J280 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 AC231657.2-201ENST00000624556 255 ntBASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV40A0A0B4J280 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV40A0A0B4J280 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 C1orf229-201ENST00000623686 2258 ntBASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 AL355802.2-201ENST00000402069 882 ntBASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 EEF1DP3-203ENST00000566025 782 ntBASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 AC104771.1-201ENST00000603335 964 ntBASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 AL109923.1-201ENST00000618799 583 ntBASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV40A0A0B4J280 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms