Protein–RNA interactions for Protein: Q9NYA1

SPHK1, Sphingosine kinase 1, humanhuman

Predictions only

Length 384 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPHK1Q9NYA1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
SPHK1Q9NYA1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SPHK1Q9NYA1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 KRT87P-202ENST00000534226 1464 ntBASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SPHK1Q9NYA1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 AC022517.1-201ENST00000592429 346 ntBASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 EP400NL-214ENST00000641289 2402 ntBASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SPHK1Q9NYA1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SPHK1Q9NYA1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SPHK1Q9NYA1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SPHK1Q9NYA1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 IKBKGP1-201ENST00000612193 1073 ntBASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 AC003102.1-202ENST00000563394 1796 ntBASIC20.57■□□□□ 0.88
SPHK1Q9NYA1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 AC104187.1-201ENST00000607510 612 ntBASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.56■□□□□ 0.88
SPHK1Q9NYA1 AC010542.4-201ENST00000563151 1910 ntBASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.55■□□□□ 0.88
SPHK1Q9NYA1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SPHK1Q9NYA1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SPHK1Q9NYA1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SPHK1Q9NYA1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms