Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LRFN3Q9BTN0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN3Q9BTN0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRFN3Q9BTN0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.66■■□□□ 1.06
LRFN3Q9BTN0 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.65■■□□□ 1.06
LRFN3Q9BTN0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.64■■□□□ 1.06
LRFN3Q9BTN0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN3Q9BTN0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN3Q9BTN0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LRFN3Q9BTN0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
LRFN3Q9BTN0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 PNMA6B-201ENST00000538162 1200 ntBASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRFN3Q9BTN0 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 AL591742.1-201ENST00000604433 565 ntBASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 AL353708.3-201ENST00000610272 989 ntBASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LRFN3Q9BTN0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.62■■□□□ 1.05
LRFN3Q9BTN0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 EEF1DP3-203ENST00000566025 782 ntBASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.61■■□□□ 1.05
LRFN3Q9BTN0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 AC113410.3-201ENST00000623366 203 ntBASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.6■■□□□ 1.05
LRFN3Q9BTN0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LRFN3Q9BTN0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 DUSP8P5-201ENST00000422884 1815 ntBASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.58■■□□□ 1.05
LRFN3Q9BTN0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms