Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
CDX2Q99626 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.72■■□□□ 1.23
CDX2Q99626 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CDX2Q99626 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.71■■□□□ 1.23
CDX2Q99626 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CDX2Q99626 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CDX2Q99626 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.71■■□□□ 1.23
CDX2Q99626 TSPY15P-201ENST00000457163 923 ntBASIC22.71■■□□□ 1.23
CDX2Q99626 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CDX2Q99626 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
CDX2Q99626 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
CDX2Q99626 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.71■■□□□ 1.23
CDX2Q99626 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.71■■□□□ 1.23
CDX2Q99626 C2orf69P4-201ENST00000565394 541 ntBASIC22.71■■□□□ 1.23
CDX2Q99626 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.71■■□□□ 1.23
CDX2Q99626 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CDX2Q99626 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
CDX2Q99626 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.23
CDX2Q99626 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
CDX2Q99626 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 RPS2P55-201ENST00000397318 883 ntBASIC22.7■■□□□ 1.22
CDX2Q99626 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.7■■□□□ 1.22
CDX2Q99626 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 AC107956.1-201ENST00000494359 873 ntBASIC22.7■■□□□ 1.22
CDX2Q99626 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.7■■□□□ 1.22
CDX2Q99626 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.7■■□□□ 1.22
CDX2Q99626 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.7■■□□□ 1.22
CDX2Q99626 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
CDX2Q99626 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.69■■□□□ 1.22
CDX2Q99626 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
CDX2Q99626 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.69■■□□□ 1.22
CDX2Q99626 EEF1DP3-203ENST00000566025 782 ntBASIC22.69■■□□□ 1.22
CDX2Q99626 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.69■■□□□ 1.22
CDX2Q99626 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.69■■□□□ 1.22
CDX2Q99626 RN7SL850P-201ENST00000579959 291 ntBASIC22.69■■□□□ 1.22
CDX2Q99626 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDX2Q99626 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC22.68■■□□□ 1.22
CDX2Q99626 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.68■■□□□ 1.22
CDX2Q99626 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.68■■□□□ 1.22
CDX2Q99626 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 CD177P1-201ENST00000606252 935 ntBASIC22.68■■□□□ 1.22
CDX2Q99626 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.68■■□□□ 1.22
CDX2Q99626 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDX2Q99626 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.67■■□□□ 1.22
CDX2Q99626 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.67■■□□□ 1.22
CDX2Q99626 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDX2Q99626 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.67■■□□□ 1.22
CDX2Q99626 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.67■■□□□ 1.22
CDX2Q99626 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.67■■□□□ 1.22
CDX2Q99626 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.67■■□□□ 1.22
CDX2Q99626 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.66■■□□□ 1.22
CDX2Q99626 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.66■■□□□ 1.22
CDX2Q99626 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.66■■□□□ 1.22
CDX2Q99626 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.66■■□□□ 1.22
CDX2Q99626 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDX2Q99626 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.65■■□□□ 1.22
CDX2Q99626 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.65■■□□□ 1.22
CDX2Q99626 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.65■■□□□ 1.22
CDX2Q99626 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC22.65■■□□□ 1.22
CDX2Q99626 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.65■■□□□ 1.22
CDX2Q99626 AC053503.5-201ENST00000601508 636 ntBASIC22.65■■□□□ 1.22
CDX2Q99626 AC069544.1-201ENST00000609399 999 ntBASIC22.65■■□□□ 1.22
CDX2Q99626 AL590326.2-201ENST00000625139 305 ntBASIC22.65■■□□□ 1.22
CDX2Q99626 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDX2Q99626 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms