Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS35Q96QK1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS35Q96QK1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS35Q96QK1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS35Q96QK1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS35Q96QK1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS35Q96QK1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS35Q96QK1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS35Q96QK1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.17■□□□□ 0.98
VPS35Q96QK1 AC079140.4-201ENST00000507448 529 ntBASIC21.17■□□□□ 0.98
VPS35Q96QK1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 FAM99A-202ENST00000538190 1989 ntBASIC21.17■□□□□ 0.98
VPS35Q96QK1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS35Q96QK1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS35Q96QK1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS35Q96QK1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS35Q96QK1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS35Q96QK1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS35Q96QK1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.14■□□□□ 0.98
VPS35Q96QK1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.14■□□□□ 0.98
VPS35Q96QK1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS35Q96QK1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VPS35Q96QK1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS35Q96QK1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS35Q96QK1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS35Q96QK1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.14■□□□□ 0.97
VPS35Q96QK1 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.14■□□□□ 0.97
VPS35Q96QK1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.14■□□□□ 0.97
VPS35Q96QK1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS35Q96QK1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS35Q96QK1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS35Q96QK1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VPS35Q96QK1 KRT87P-202ENST00000534226 1464 ntBASIC21.13■□□□□ 0.97
VPS35Q96QK1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
VPS35Q96QK1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS35Q96QK1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.13■□□□□ 0.97
VPS35Q96QK1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS35Q96QK1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS35Q96QK1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 C11orf96-202ENST00000528572 1834 ntBASIC21.12■□□□□ 0.97
VPS35Q96QK1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS35Q96QK1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS35Q96QK1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms