Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHROOM3Q8TF72 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHROOM3Q8TF72 MIR6084-201ENST00000622012 110 ntBASIC21.85■■□□□ 1.09
SHROOM3Q8TF72 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 AC022517.1-201ENST00000592429 346 ntBASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.84■■□□□ 1.09
SHROOM3Q8TF72 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 AC009237.3-201ENST00000393279 1427 ntBASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHROOM3Q8TF72 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.83■■□□□ 1.08
SHROOM3Q8TF72 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
SHROOM3Q8TF72 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
SHROOM3Q8TF72 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SHROOM3Q8TF72 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 KRT18P14-201ENST00000534205 1250 ntBASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHROOM3Q8TF72 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 AC003102.1-202ENST00000563394 1796 ntBASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.81■■□□□ 1.08
SHROOM3Q8TF72 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 AL137784.2-201ENST00000607332 1000 ntBASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.8■■□□□ 1.08
SHROOM3Q8TF72 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SHROOM3Q8TF72 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.78■■□□□ 1.08
SHROOM3Q8TF72 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms