Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 AC092171.4-201ENST00000609130 632 ntBASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.74■□□□□ 0.75
DEPDC4Q8N2C3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 AC096631.2-201ENST00000436136 790 ntBASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 FEM1AP4-201ENST00000443167 1987 ntBASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
DEPDC4Q8N2C3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 LINC01521-201ENST00000504184 1943 ntBASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.72■□□□□ 0.75
DEPDC4Q8N2C3 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 DUX4L19-201ENST00000557448 1267 ntBASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
DEPDC4Q8N2C3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
DEPDC4Q8N2C3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
DEPDC4Q8N2C3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.69■□□□□ 0.74
DEPDC4Q8N2C3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.68■□□□□ 0.74
DEPDC4Q8N2C3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms