Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.84■□□□□ 0.61
SKA3Q8IX90 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.84■□□□□ 0.61
SKA3Q8IX90 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SKA3Q8IX90 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
SKA3Q8IX90 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
SKA3Q8IX90 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SKA3Q8IX90 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 AL034346.1-201ENST00000568244 1277 ntBASIC18.83■□□□□ 0.6
SKA3Q8IX90 AL354811.1-201ENST00000610286 706 ntBASIC18.83■□□□□ 0.6
SKA3Q8IX90 AL358852.1-201ENST00000623174 1268 ntBASIC18.83■□□□□ 0.6
SKA3Q8IX90 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SKA3Q8IX90 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA3Q8IX90 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA3Q8IX90 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.83■□□□□ 0.6
SKA3Q8IX90 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA3Q8IX90 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SKA3Q8IX90 FAM99A-202ENST00000538190 1989 ntBASIC18.82■□□□□ 0.6
SKA3Q8IX90 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.82■□□□□ 0.6
SKA3Q8IX90 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA3Q8IX90 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA3Q8IX90 BX005040.4-201ENST00000637145 1518 ntBASIC18.81■□□□□ 0.6
SKA3Q8IX90 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA3Q8IX90 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA3Q8IX90 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA3Q8IX90 MIR6084-201ENST00000622012 110 ntBASIC18.81■□□□□ 0.6
SKA3Q8IX90 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SKA3Q8IX90 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA3Q8IX90 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA3Q8IX90 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA3Q8IX90 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA3Q8IX90 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SKA3Q8IX90 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA3Q8IX90 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
SKA3Q8IX90 AC026471.6-201ENST00000622954 1905 ntBASIC18.78■□□□□ 0.6
SKA3Q8IX90 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.78■□□□□ 0.6
SKA3Q8IX90 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKA3Q8IX90 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA3Q8IX90 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SKA3Q8IX90 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA3Q8IX90 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA3Q8IX90 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA3Q8IX90 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SKA3Q8IX90 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.78■□□□□ 0.6
SKA3Q8IX90 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms