Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP48Q86UV5 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC26.17■■□□□ 1.78
USP48Q86UV5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC26.16■■□□□ 1.78
USP48Q86UV5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.16■■□□□ 1.78
USP48Q86UV5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC26.16■■□□□ 1.78
USP48Q86UV5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC26.16■■□□□ 1.78
USP48Q86UV5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP48Q86UV5 AC008687.6-201ENST00000596318 630 ntBASIC26.16■■□□□ 1.78
USP48Q86UV5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
USP48Q86UV5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.16■■□□□ 1.78
USP48Q86UV5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP48Q86UV5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 LINC00526-201ENST00000581067 1875 ntBASIC26.15■■□□□ 1.78
USP48Q86UV5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
USP48Q86UV5 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 SLC29A4P1-201ENST00000398760 971 ntBASIC26.15■■□□□ 1.78
USP48Q86UV5 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
USP48Q86UV5 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
USP48Q86UV5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC26.15■■□□□ 1.78
USP48Q86UV5 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC26.15■■□□□ 1.78
USP48Q86UV5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.15■■□□□ 1.78
USP48Q86UV5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP48Q86UV5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP48Q86UV5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP48Q86UV5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
USP48Q86UV5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC26.14■■□□□ 1.78
USP48Q86UV5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.14■■□□□ 1.78
USP48Q86UV5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.14■■□□□ 1.78
USP48Q86UV5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
USP48Q86UV5 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC26.14■■□□□ 1.78
USP48Q86UV5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC26.14■■□□□ 1.78
USP48Q86UV5 AC068587.7-201ENST00000641602 218 ntBASIC26.14■■□□□ 1.78
USP48Q86UV5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP48Q86UV5 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP48Q86UV5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.14■■□□□ 1.77
USP48Q86UV5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
USP48Q86UV5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
USP48Q86UV5 AC010141.3-201ENST00000456659 717 ntBASIC26.13■■□□□ 1.77
USP48Q86UV5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC26.13■■□□□ 1.77
USP48Q86UV5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC26.13■■□□□ 1.77
USP48Q86UV5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 AC104187.1-201ENST00000607510 612 ntBASIC26.13■■□□□ 1.77
USP48Q86UV5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 AC004687.1-201ENST00000579003 1625 ntBASIC26.13■■□□□ 1.77
USP48Q86UV5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP48Q86UV5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.13■■□□□ 1.77
USP48Q86UV5 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
USP48Q86UV5 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC26.12■■□□□ 1.77
USP48Q86UV5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC26.12■■□□□ 1.77
USP48Q86UV5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC26.12■■□□□ 1.77
USP48Q86UV5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC26.12■■□□□ 1.77
USP48Q86UV5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.12■■□□□ 1.77
USP48Q86UV5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.12■■□□□ 1.77
USP48Q86UV5 TBCB-214ENST00000629269 413 ntTSL 5 BASIC26.12■■□□□ 1.77
USP48Q86UV5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP48Q86UV5 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC26.11■■□□□ 1.77
USP48Q86UV5 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.11■■□□□ 1.77
USP48Q86UV5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC26.11■■□□□ 1.77
USP48Q86UV5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC26.11■■□□□ 1.77
USP48Q86UV5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.11■■□□□ 1.77
USP48Q86UV5 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
USP48Q86UV5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
USP48Q86UV5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP48Q86UV5 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.1■■□□□ 1.77
USP48Q86UV5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms