Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHFQ7M4L6 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHFQ7M4L6 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.23■□□□□ 0.67
SHFQ7M4L6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SHFQ7M4L6 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.23■□□□□ 0.67
SHFQ7M4L6 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.23■□□□□ 0.67
SHFQ7M4L6 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHFQ7M4L6 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHFQ7M4L6 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHFQ7M4L6 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.22■□□□□ 0.67
SHFQ7M4L6 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.22■□□□□ 0.67
SHFQ7M4L6 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.22■□□□□ 0.67
SHFQ7M4L6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHFQ7M4L6 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SHFQ7M4L6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHFQ7M4L6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.21■□□□□ 0.67
SHFQ7M4L6 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHFQ7M4L6 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHFQ7M4L6 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHFQ7M4L6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SHFQ7M4L6 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.21■□□□□ 0.67
SHFQ7M4L6 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.21■□□□□ 0.67
SHFQ7M4L6 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SHFQ7M4L6 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SHFQ7M4L6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.2■□□□□ 0.66
SHFQ7M4L6 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.2■□□□□ 0.66
SHFQ7M4L6 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.2■□□□□ 0.66
SHFQ7M4L6 AL356740.2-201ENST00000601559 647 ntBASIC19.2■□□□□ 0.66
SHFQ7M4L6 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.2■□□□□ 0.66
SHFQ7M4L6 AC133637.1-201ENST00000624115 1537 ntBASIC19.2■□□□□ 0.66
SHFQ7M4L6 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHFQ7M4L6 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.19■□□□□ 0.66
SHFQ7M4L6 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.19■□□□□ 0.66
SHFQ7M4L6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SHFQ7M4L6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SHFQ7M4L6 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHFQ7M4L6 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.18■□□□□ 0.66
SHFQ7M4L6 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHFQ7M4L6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 AC079089.2-201ENST00000531211 1277 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 pRNA.6-201ENST00000610482 90 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 pRNA.5-201ENST00000612139 90 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 pRNA.11-201ENST00000618423 90 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 pRNA.13-201ENST00000619112 90 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 AL031602.1-201ENST00000633169 911 ntBASIC19.17■□□□□ 0.66
SHFQ7M4L6 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHFQ7M4L6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
SHFQ7M4L6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHFQ7M4L6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms