Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS13CQ709C8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS13CQ709C8 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VPS13CQ709C8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13CQ709C8 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 AC008694.1-202ENST00000636953 945 ntBASIC17.95■□□□□ 0.46
VPS13CQ709C8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13CQ709C8 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13CQ709C8 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VPS13CQ709C8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13CQ709C8 TERF1P5-201ENST00000477545 1207 ntBASIC17.95■□□□□ 0.46
VPS13CQ709C8 UNC93B5-201ENST00000530315 699 ntBASIC17.95■□□□□ 0.46
VPS13CQ709C8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS13CQ709C8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VPS13CQ709C8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS13CQ709C8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS13CQ709C8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS13CQ709C8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS13CQ709C8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS13CQ709C8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS13CQ709C8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.92■□□□□ 0.46
VPS13CQ709C8 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS13CQ709C8 EEF1DP3-203ENST00000566025 782 ntBASIC17.92■□□□□ 0.46
VPS13CQ709C8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VPS13CQ709C8 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS13CQ709C8 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 FAM210CP-201ENST00000445714 574 ntBASIC17.91■□□□□ 0.46
VPS13CQ709C8 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.91■□□□□ 0.46
VPS13CQ709C8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VPS13CQ709C8 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 AC068587.7-201ENST00000641602 218 ntBASIC17.91■□□□□ 0.46
VPS13CQ709C8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.91■□□□□ 0.46
VPS13CQ709C8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 AL512625.2-201ENST00000417533 625 ntBASIC17.9■□□□□ 0.46
VPS13CQ709C8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.9■□□□□ 0.46
VPS13CQ709C8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms