Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.08■■□□□ 1.29
KRT39Q6A163 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.08■■□□□ 1.29
KRT39Q6A163 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.08■■□□□ 1.29
KRT39Q6A163 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
KRT39Q6A163 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
KRT39Q6A163 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.08■■□□□ 1.28
KRT39Q6A163 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT39Q6A163 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT39Q6A163 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.07■■□□□ 1.28
KRT39Q6A163 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 AC055733.4-201ENST00000638462 1354 ntBASIC23.07■■□□□ 1.28
KRT39Q6A163 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.07■■□□□ 1.28
KRT39Q6A163 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 AC104564.3-201ENST00000582367 638 ntBASIC23.07■■□□□ 1.28
KRT39Q6A163 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.07■■□□□ 1.28
KRT39Q6A163 MIR6084-201ENST00000622012 110 ntBASIC23.07■■□□□ 1.28
KRT39Q6A163 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
KRT39Q6A163 AC244015.2-201ENST00000616358 1861 ntBASIC23.07■■□□□ 1.28
KRT39Q6A163 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
KRT39Q6A163 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
KRT39Q6A163 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.06■■□□□ 1.28
KRT39Q6A163 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.06■■□□□ 1.28
KRT39Q6A163 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.06■■□□□ 1.28
KRT39Q6A163 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
KRT39Q6A163 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.06■■□□□ 1.28
KRT39Q6A163 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
KRT39Q6A163 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.05■■□□□ 1.28
KRT39Q6A163 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.05■■□□□ 1.28
KRT39Q6A163 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.05■■□□□ 1.28
KRT39Q6A163 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 ZNRF2P3-201ENST00000424200 374 ntBASIC23.05■■□□□ 1.28
KRT39Q6A163 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
KRT39Q6A163 TPRG1LP1-201ENST00000598702 760 ntBASIC23.05■■□□□ 1.28
KRT39Q6A163 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
KRT39Q6A163 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.05■■□□□ 1.28
KRT39Q6A163 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
KRT39Q6A163 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
KRT39Q6A163 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
KRT39Q6A163 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
KRT39Q6A163 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT39Q6A163 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT39Q6A163 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.04■■□□□ 1.28
KRT39Q6A163 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.04■■□□□ 1.28
KRT39Q6A163 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
KRT39Q6A163 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
KRT39Q6A163 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.04■■□□□ 1.28
KRT39Q6A163 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
KRT39Q6A163 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.03■■□□□ 1.28
KRT39Q6A163 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.03■■□□□ 1.28
KRT39Q6A163 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
KRT39Q6A163 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT39Q6A163 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
KRT39Q6A163 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
KRT39Q6A163 AC027612.3-201ENST00000413684 1047 ntBASIC23.03■■□□□ 1.28
KRT39Q6A163 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
KRT39Q6A163 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.03■■□□□ 1.28
KRT39Q6A163 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
KRT39Q6A163 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.03■■□□□ 1.28
KRT39Q6A163 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.02■■□□□ 1.28
KRT39Q6A163 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.02■■□□□ 1.28
KRT39Q6A163 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT39Q6A163 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT39Q6A163 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.02■■□□□ 1.28
KRT39Q6A163 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT39Q6A163 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT39Q6A163 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.02■■□□□ 1.28
KRT39Q6A163 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
KRT39Q6A163 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
KRT39Q6A163 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.02■■□□□ 1.28
KRT39Q6A163 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.27
KRT39Q6A163 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT39Q6A163 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
KRT39Q6A163 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
KRT39Q6A163 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms