Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
CX3CL1P78423 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.14■□□□□ 0.33
CX3CL1P78423 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.14■□□□□ 0.33
CX3CL1P78423 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.14■□□□□ 0.33
CX3CL1P78423 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.14■□□□□ 0.33
CX3CL1P78423 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.14■□□□□ 0.33
CX3CL1P78423 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CX3CL1P78423 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CX3CL1P78423 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CX3CL1P78423 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CX3CL1P78423 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CX3CL1P78423 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CX3CL1P78423 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CX3CL1P78423 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CX3CL1P78423 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.13■□□□□ 0.33
CX3CL1P78423 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CX3CL1P78423 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.12■□□□□ 0.33
CX3CL1P78423 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.12■□□□□ 0.33
CX3CL1P78423 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.12■□□□□ 0.33
CX3CL1P78423 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CX3CL1P78423 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CX3CL1P78423 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CX3CL1P78423 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.11■□□□□ 0.33
CX3CL1P78423 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CL1P78423 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CL1P78423 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
CX3CL1P78423 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.11■□□□□ 0.33
CX3CL1P78423 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
CX3CL1P78423 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.11■□□□□ 0.33
CX3CL1P78423 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CX3CL1P78423 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.1■□□□□ 0.33
CX3CL1P78423 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 C11orf96-202ENST00000528572 1834 ntBASIC17.1■□□□□ 0.33
CX3CL1P78423 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CX3CL1P78423 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CL1P78423 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CL1P78423 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.1■□□□□ 0.33
CX3CL1P78423 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.1■□□□□ 0.33
CX3CL1P78423 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.1■□□□□ 0.33
CX3CL1P78423 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CX3CL1P78423 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CX3CL1P78423 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CX3CL1P78423 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms