Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 TSPY26P-201ENST00000476365 1326 ntBASIC20.3■□□□□ 0.84
RAE1P78406 FEM1AP4-201ENST00000443167 1987 ntBASIC20.3■□□□□ 0.84
RAE1P78406 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 MIR939-201ENST00000401314 82 ntBASIC20.3■□□□□ 0.84
RAE1P78406 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.3■□□□□ 0.84
RAE1P78406 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.3■□□□□ 0.84
RAE1P78406 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 AL355001.2-201ENST00000620617 1191 ntBASIC20.3■□□□□ 0.84
RAE1P78406 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.3■□□□□ 0.84
RAE1P78406 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RAE1P78406 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.29■□□□□ 0.84
RAE1P78406 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.29■□□□□ 0.84
RAE1P78406 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.29■□□□□ 0.84
RAE1P78406 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.29■□□□□ 0.84
RAE1P78406 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RAE1P78406 AF213884.3-201ENST00000563833 479 ntBASIC20.29■□□□□ 0.84
RAE1P78406 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
RAE1P78406 AL136967.2-201ENST00000623968 743 ntBASIC20.29■□□□□ 0.84
RAE1P78406 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.29■□□□□ 0.84
RAE1P78406 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.29■□□□□ 0.84
RAE1P78406 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.29■□□□□ 0.84
RAE1P78406 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.29■□□□□ 0.84
RAE1P78406 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RAE1P78406 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
RAE1P78406 AF106564.1-201ENST00000607058 2553 ntBASIC20.29■□□□□ 0.84
RAE1P78406 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.28■□□□□ 0.84
RAE1P78406 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.28■□□□□ 0.84
RAE1P78406 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.28■□□□□ 0.84
RAE1P78406 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.28■□□□□ 0.84
RAE1P78406 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RAE1P78406 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.27■□□□□ 0.84
RAE1P78406 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RAE1P78406 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.27■□□□□ 0.84
RAE1P78406 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 RASA4CP-201ENST00000424092 1398 ntBASIC20.27■□□□□ 0.84
RAE1P78406 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RAE1P78406 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RAE1P78406 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.27■□□□□ 0.84
RAE1P78406 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.27■□□□□ 0.84
RAE1P78406 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.27■□□□□ 0.84
RAE1P78406 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.27■□□□□ 0.84
RAE1P78406 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RAE1P78406 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
RAE1P78406 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.27■□□□□ 0.83
RAE1P78406 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RAE1P78406 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.26■□□□□ 0.83
RAE1P78406 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 SUDS3P1-201ENST00000505831 966 ntBASIC20.26■□□□□ 0.83
RAE1P78406 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
RAE1P78406 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RAE1P78406 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.26■□□□□ 0.83
RAE1P78406 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RAE1P78406 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.26■□□□□ 0.83
RAE1P78406 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.25■□□□□ 0.83
RAE1P78406 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RAE1P78406 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.25■□□□□ 0.83
RAE1P78406 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.25■□□□□ 0.83
RAE1P78406 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.25■□□□□ 0.83
RAE1P78406 AC105233.4-201ENST00000642045 216 ntBASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms