Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.77■□□□□ 0.76
RNF4P78317 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.77■□□□□ 0.76
RNF4P78317 KRT18P61-201ENST00000585825 1298 ntBASIC19.77■□□□□ 0.76
RNF4P78317 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.77■□□□□ 0.76
RNF4P78317 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.77■□□□□ 0.76
RNF4P78317 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.77■□□□□ 0.76
RNF4P78317 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
RNF4P78317 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
RNF4P78317 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.76■□□□□ 0.75
RNF4P78317 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RNF4P78317 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.76■□□□□ 0.75
RNF4P78317 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.76■□□□□ 0.75
RNF4P78317 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.76■□□□□ 0.75
RNF4P78317 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.76■□□□□ 0.75
RNF4P78317 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.76■□□□□ 0.75
RNF4P78317 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
RNF4P78317 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.76■□□□□ 0.75
RNF4P78317 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RNF4P78317 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.75■□□□□ 0.75
RNF4P78317 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 AL117328.2-201ENST00000624617 1940 ntBASIC19.75■□□□□ 0.75
RNF4P78317 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.75■□□□□ 0.75
RNF4P78317 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.75■□□□□ 0.75
RNF4P78317 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.75■□□□□ 0.75
RNF4P78317 AC022517.1-201ENST00000592429 346 ntBASIC19.75■□□□□ 0.75
RNF4P78317 AC092666.2-201ENST00000613287 246 ntBASIC19.75■□□□□ 0.75
RNF4P78317 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
RNF4P78317 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.75■□□□□ 0.75
RNF4P78317 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RNF4P78317 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.75■□□□□ 0.75
RNF4P78317 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
RNF4P78317 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.74■□□□□ 0.75
RNF4P78317 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 FAM99A-202ENST00000538190 1989 ntBASIC19.74■□□□□ 0.75
RNF4P78317 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.74■□□□□ 0.75
RNF4P78317 KRT19P1-201ENST00000405746 1186 ntBASIC19.74■□□□□ 0.75
RNF4P78317 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
RNF4P78317 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.74■□□□□ 0.75
RNF4P78317 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
RNF4P78317 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.74■□□□□ 0.75
RNF4P78317 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RNF4P78317 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
RNF4P78317 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
RNF4P78317 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.73■□□□□ 0.75
RNF4P78317 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF4P78317 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF4P78317 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF4P78317 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
RNF4P78317 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF4P78317 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF4P78317 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF4P78317 AC104187.1-201ENST00000607510 612 ntBASIC19.72■□□□□ 0.75
RNF4P78317 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 AC026471.6-201ENST00000622954 1905 ntBASIC19.72■□□□□ 0.75
RNF4P78317 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms